MmuALTD0010627-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24976117-24980108:+
Coord C1 exon
chr2:24976117-24976217
Coord A exon
chr2:24976218-24976313
Coord C2 exon
chr2:24980034-24980108
Length
96 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GACTTCTGTTCTCTCCTCAGGCT
3' ss Score
10.97
Exon sequences
Seq C1 exon
CAACTTGTTTTGGAGCACAGAGTTCTGAAGTCTCTTCCAATAAGAGCGTTTGTGTGGAAAGGAGCTGGCAAGACTGGAACTACAGCTGTCCTGCTGTAAAG
Seq A exon
GTTCGGGTACAGCAGTTTGTCTCAGCCTGTCTCCTTTTCGCCCTCCACATTGCTTTGCTTTCAGTCATGCAGAATGAGGAAGATGCCTGCCTTGAG
Seq C2 exon
GCTGGCTACTGTTTGGGTACCACCCTGAGCTCCTGGAGGCTGCATTTCATGGAGGAGCAGTCCCAGTCCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-0-2,1-2,2-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTGTTTTGGAGCACAGAGT
R:
CTGGGACTGCTCCTCCATGAA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types