MmuALTD0010857-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:4853432-4856844:+
Coord C1 exon
chr6:4853432-4853448
Coord A exon
chr6:4853449-4853905
Coord C2 exon
chr6:4855226-4856844
Length
457 bp
Sequences
Splice sites
5' ss Seq
CAAGTTGGT
5' ss Score
2.11
3' ss Seq
CTCATTCTTTTCTATTACAGATG
3' ss Score
10.86
Exon sequences
Seq C1 exon
CCCGCCCGGGCCGCTCG
Seq A exon
GTAAGGGGGCGGCGTGCGGGTGGCGGGGCGGCGGGAGCGCGGGGACGCGGCGGCGTGCACAAAGGCGGACCCGCGGGCGGGTGGGGGTGGACTGCGGTCCGGGAGCGCCAGGGTGAGGAGGGAGGCTTGATCCTCTGCGGGATCTATTGTTTCCCCGGCACACTGGGAGGAAAAGCAGAGGCATTCGTGTGATTGTCACCCTAGCCTTTGCTCTCCCTCCGCTCCAGTGTGGCCGGCGAGCTCGTCTCTCCCCCGGTGCCACAGACCGGGATCCGCCTGGCAGCGGCCCGGAGCCGCCGCCAATGTGTTAGGACTTCAGGTGCTTCTTGGCACCAGGCTAGACTGCGACCTCCTCCTGCCTTAGCGCCTGGCGTCACCTGCTCTCCCGGCCCTGCCCCGGGGGCCGAGGGATGGCGTCCCGAACCGGGCTGGGGAAAATCAATCGGCTGCCTCTCAA
Seq C2 exon
ATGAACCTCTAGTCTTGCTTTGAAAAAAGCTATTTTGTGTAACTCTTGACTGTGAATACATTTCTAATACAGCCTTTGGAATCGTCACGGGACAAGTGTGCCATTTGAGCGGCCCTGTGCCTGGTCAGACACTGGGGATTGAGAAGAGAGGTCTGTTTGGCTTTTTGGTTGTTTTTCCCAGTGACCATTATGAGCATTGGCTTTTCACCCTTGAAGTAAACATGTTGAAGGCGGAATCTTCAGGGGAGCGGACCACTCTCAGAAGTGCCTCTCCTCACAGGAATGCGTACAGAACAGAGTTCCAGGCACTGAAAAGTACTTTTGACAAACCCAAGTCAGATGGGGAACAGAAAACGAAAGAAGGTGAGGGCTCCCAGCAGAGCAGAGGTAGAAAGTATGGCTCCAATGTCAACAGAATTAAAAATCTATTTATGCAGATGGGTATGGAACCCAGCGAGAATGCTGCTATCATTGCCAAAACCAGGGGGAAAGGTAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.938
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: