Special

MmuALTD0011134-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine, 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23974458-23979492:-
Coord C1 exon
chr17:23979212-23979492
Coord A exon
chr17:23979193-23979211
Coord C2 exon
chr17:23974458-23974615
Length
19 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGC
5' ss Score
4.44
3' ss Seq
CTGTATCTTCCTACCCCCAGAGC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTACCTTGATCCAGAAAAGTGGACCGTCCAGCTTGGGCAGCTTACATCCAAGCCGTCTTACTGGAACAGGAAGGCCTATTCTGGACGGTACAGGGTAAAGGACATCATCGTAAACTCCGAAGACAAGCTGAAGTCCCATGACCTGGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGGACATCCAGCCTGTCTGTGTGCAGCCTTCCACCTTTACGTCCCAGCACCAGCCCAGGTGCTGGGTGACCGGCTGGGGAGTCCTTCAGGAGGATTTGA
Seq A exon
GTGAGATTAGCAACGCAGG
Seq C2 exon
AGCCTCTGCCACCGCCCTATCACCTTCGAGAAGTACAGGTCAGCATCCTAAACAACAGCAGGTGCCAGGAGCTGTTCGAGATTTTCTCCCTACACCACTTGATCACCAAGGATGTGTTCTGTGCTGGCGCTGAGGATGGGAGCGCAGACACCTGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-7-5,8-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0008921=Trypsin=PU(47.9=95.8)

							
A:
NA

							
C2:
PF0008921=Trypsin=FE(21.9=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000024926f1479A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000024926, ENSMUSP00000120141, ENSMUSP00000122453
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr16:2868997-2868998 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr25:2258264-2258265 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTTCCACCTTTACGTCCCAGC

				
R: 
TTCTCGAAGGTGATAGGGCGG

				
Band lengths: 
104-123

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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