MmuALTD0011136-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000032493 | Prss44
Description
protease, serine 44 [Source:MGI Symbol;Acc:MGI:1920586]
Coordinates
chr9:110814600-110815552:+
Coord C1 exon
chr9:110814600-110814723
Coord A exon
chr9:110814724-110814756
Coord C2 exon
chr9:110815293-110815552
Length
33 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCTTGAGGATCTCTTTGCAGACA
3' ss Score
6.28
Exon sequences
Seq C1 exon
CTTGTGGCCACAGAACTGCAAGGATAGTTGGTGGAAGGCCTGCGCCAGCGAGGAAGTGGCCGTGGCAGGTGAGCCTGCAGGTCCACAAGCAGCACATCTGTGGTGGCTCCCTCATCAGCAAATG
Seq A exon
GTGGGTGATTACAGCAGCCCACTGTGTATATGG
Seq C2 exon
ACATCTGGATTATGCAGTGTTCATGGGAGATGCTGACTTGTGGTCCAAAAGGCCAGTCAGGATTCCAGTCCAGGACATCATCGTTCACCAGGATTTCTCCATGATGAGAACAGTTGTTCATGACATCGCCCTTGTTCTGCTGGCCTTCCCTGTGAATTACAGCGTCAACATCCAGCCCGTGTGCATCCCTGAAAAGTCTTTCTTGGTACAACCTGGGACGCTATGCTGGGTGACCGGATGGGGCAAAGTACTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032493-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.223 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(94.1=78.0)
A:
NA
C2:
PF0008921=Trypsin=PU(69.3=98.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACAAGCAGCACATCTGT
R:
ACTGGAATCCTGACTGGCCTT
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types