Special

MmuALTD0011136-3/3 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000032493 | Prss44
Description
protease, serine, 44 [Source:MGI Symbol;Acc:MGI:1920586]
Coordinates
chr9:110717104-110718056:+
Coord C1 exon
chr9:110717104-110717171
Coord A exon
chr9:110717172-110717260
Coord C2 exon
chr9:110717797-110718056
Length
89 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCTTGAGGATCTCTTTGCAGACA
3' ss Score
6.28
Exon sequences
Seq C1 exon
CTTGTGGCCACAGAACTGCAAGGATAGTTGGTGGAAGGCCTGCGCCAGCGAGGAAGTGGCCGTGGCAG
Seq A exon
GTGAGCCTGCAGGTCCACAAGCAGCACATCTGTGGTGGCTCCCTCATCAGCAAATGGTGGGTGATTACAGCAGCCCACTGTGTATATGG
Seq C2 exon
ACATCTGGATTATGCAGTGTTCATGGGAGATGCTGACTTGTGGTCCAAAAGGCCAGTCAGGATTCCAGTCCAGGACATCATCGTTCACCAGGATTTCTCCATGATGAGAACAGTTGTTCATGACATCGCCCTTGTTCTGCTGGCCTTCCCTGTGAATTACAGCGTCAACATCCAGCCCGTGTGCATCCCTGAAAAGTCTTTCTTGGTACAACCTGGGACGCTATGCTGGGTGACCGGATGGGGCAAAGTACTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032493-1-1,2-1,3-1-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.223 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0008921=Trypsin=WD(100=78.6)

							
A:
NA

							
C2:
PF0008921=Trypsin=PU(44.6=98.8)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000095948





     
                   









    
Main Skipping Isoform:
ENSMUSP00000117039





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:46853205-46853206 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr22:53260628-53260629 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr4:53218090-53218091 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GATAGTTGGTGGAAGGCCTGC

				
R: 
ACAAGGGCGATGTCATGAACA

				
Band lengths: 
181-270

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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