MmuALTD0011359-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000060224 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:MGI Symbol;Acc:MGI:1921830]
Coordinates
chr19:42731319-42733877:-
Coord C1 exon
chr19:42733721-42733877
Coord A exon
NA
Coord C2 exon
chr19:42731319-42731473
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTGGGT
5' ss Score
3.99
3' ss Seq
TGTTCCTCCTGACACCACAGGCC
3' ss Score
7.04
Exon sequences
Seq C1 exon
TGGCTGTGGACAGGCTGCCAAACTTCCAGGCGGCCCCTAATGCTCCCGGGGACCAGCCCCAAGGTCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGTGGCCTGCCTTCCCAAAA
Seq A exon
NA
Seq C2 exon
GCCTATGATTGAACTCTGCATCCCTTCATCGCTGGACCCTACCCTGGCTCCACCAGGCTGCCATGTTGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGAATGAGCAGGAGAAAAACACCTATGCGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060224-23-35,24-35-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTGTGAAGACACCCTGC
R:
CAGCGATGAAGGGATGCAGAG
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types