MmuALTD0011387-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000091474 | 2610021A01Rik
Description
RIKEN cDNA 2610021A01 gene [Source:MGI Symbol;Acc:MGI:1922662]
Coordinates
chr7:41612371-41613251:+
Coord C1 exon
chr7:41612371-41612493
Coord A exon
chr7:41612494-41612497
Coord C2 exon
chr7:41613156-41613251
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TTGTCTCTTCTGATACACAGGCC
3' ss Score
6.51
Exon sequences
Seq C1 exon
GGTCGGTTAACTTTCAAAGACGTGGCCATAGAATTCTCCCAGGAGGAGTGGGAATGCCTGGACTCTGCTCAGCGGACGTTGTATAGAGATGTCATGTTAGAGATCTACAGCATTCTGGTCTCT
Seq A exon
GTGG
Seq C2 exon
GCCTTTCAGTATCAAAATTAGAGCTACTCACCTGTTTTGAACAAAATGAAGAACCCTCCATTGCAGGCATAAAGGAGTTAAAAGGCATAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091474-11-12,12-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGCGGACGTTGTATAG
R:
TGTTCAAAACAGGTGAGTAGCTCT
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types