MmuALTD0011450-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000070953 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Coordinates
chr2:34795172-34797433:-
Coord C1 exon
chr2:34797375-34797433
Coord A exon
NA
Coord C2 exon
chr2:34795172-34795329
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTCTGT
5' ss Score
2.86
3' ss Seq
GCATGCCTTCCCTTTGGCAGGTA
3' ss Score
8.47
Exon sequences
Seq C1 exon
GGCATCATGAAGCAGCTGCCCATCTTGGAGCCTGGAGACAAGCCCAGGAAAGCCACATG
Seq A exon
NA
Seq C2 exon
GTACACTTTGACTTGCCCTGGAGACAGGCCCTGCCCTCGAGTTGGCCACAGCTGCTCATATTTCCCCCCAGTTGGTGATGCCGAGAGCGGGAAGATCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGTTTCTCAGATGTACACACCATGGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070953-3-3,4-3,5-3-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764610=Kelch_2=PU(85.1=88.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTGGAGCCTGGAGACA
R:
ATATGAGCAGCTGTGGCCAAC
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types