MmuALTD0011455-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162237307-162239246:-
Coord C1 exon
chr1:162239202-162239246
Coord A exon
chr1:162239109-162239201
Coord C2 exon
chr1:162237307-162238042
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TACTTTTTTTTTTTTAACAGAAT
3' ss Score
9.48
Exon sequences
Seq C1 exon
GAAGCAGTTGCTCTGGCTTTCACATCTGGAGAGCCACGCTGCGAG
Seq A exon
GTAAACCTCCAAGTCTGCTGCCCTGATGAAAATATGACGAGGTCCACGCTATCTTTAAAAATACTACTGAAAAGATAGAAAGGAATTCAAAAG
Seq C2 exon
AATTACTCAGAAGGGAGAGAAATTCTTTTTTTCCCCCTTCCGTCTTCAGGAGATAAATTTTAACTGCACCAAGAATTCTATAAATTCTGAGAAATAATAATGGCTTATCATCTTTTTATTTTCTAAGAATAAGGAAAAATAAGCACTGATTGCTTTAAGAAAAATTGCTCTTCTTCCAAGAAGAATCTTCATGTGAATAATAATGAAGAGATGAACTGTTTGAAACTGAGTTACCGAGGACGTAACATAAATCAACTTTTGTTTGGGAGGAATTTCATATAGGCTATTTCTAGTAAGGAACCCTTCTTCTTTCTATTTTCTGAAGTGTAAAGAAGATTCCCGGCCTGGTGGTCTCATGCGCTGGGTTGAGAATGCAGGTGTTTTTGGTGTACACTTCCTGCAGAGATAAGAGACCTTGTGGTTTCCACTGGGGGTGAATTACTAGGCAAGTCTGTGATAGCAGCTGCCTTTTCTTTTTTCCTCCTCTCTTACCCGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-27-29,28-29-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGAGAGCCACGCTGC
R:
AGCAATTTTTCTTAAAGCAATCAGTG
Band lengths:
191-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: