MmuALTD0011593-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32394038-32395219:-
Coord C1 exon
chr17:32395112-32395219
Coord A exon
chr17:32395104-32395111
Coord C2 exon
chr17:32394038-32394274
Length
8 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTTT
5' ss Score
1.95
3' ss Seq
TATTGCTTCTTCTGCCCCAGCTG
3' ss Score
7.28
Exon sequences
Seq C1 exon
GGCAGGTTGTGCGGTGTCTCTGTGCCTCCACTGAGGACTGTGAAGTGGACCCCAGCAAGTGCCCAACACCAGAGCTGCCAAAACACCAAGCTAGACTGCGAGACAGCT
Seq A exon
GTGAGGAG
Seq C2 exon
CTGTTTCCCAGCAGAGCTGGGCTCCGTGTTCTCAAGTTGGCGTGAAGCATGCAAAGCACGAGGCTCTGAGGCCCTGGGCCCCCGGCTGGTGTGTGCTTCCCTCTTCCTGAGGCTTTTATGCCCTGCCATCTTGGCACCTAGCCTCTTTGGCCTGGCACCAGAGCACCCAGCCCCAGGCCCAGCCAGAACTCTTACACTCATCGCCAAGGTCATCCAGAACCTCGCCAACTGTGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142-18-21,19-21,20-21,21-21-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(37.1=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAGAGCTGCCAAAACA
R:
CTCGTGCTTTGCATGCTTCAC
Band lengths:
106-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types