Special

MmuALTD0011652-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000031167 | Rbm3
Description
RNA binding motif protein 3 [Source:MGI Symbol;Acc:MGI:1099460]
Coordinates
chrX:7716101-7720455:-
Coord C1 exon
chrX:7720377-7720455
Coord A exon
NA
Coord C2 exon
chrX:7716101-7718334
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGT
5' ss Score
5.12
3' ss Seq
TCATGAATTTGCTTTGGCAGGTG
3' ss Score
7.73
Exon sequences
Seq C1 exon
CCAGGGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAAAAT
Seq A exon
NA
Seq C2 exon
GTGGATGAAGACTCAGGAACTTCCCAGAATACTGCCTCAACCAATGAGCCAGGCCCAGGTTATGGGGCACTGGGGCTAAGCCTACCAGGTGGGTACTTGGTCAGAGGAAGGAAGCATTCTATGCTGGGCCTTTGGGGAACTGGCAGAACCACATGCTGCCCTAAAGGTAGGTCAGGGGTGGGGAGGAAGGAAAGCCAGTGTCACTTGAGGTGGTAGTTCATCATCAACCACAAAATGACAAGAGTTGGATGGTTTTCTAGCTGTGTGTGTATATGTATGTGTATAGCAGCAACAAAGAACAAAAATAGTAGCCTCATATTTCTGTAACAATTGTTCTACTTTCCAGATAGATAACTGGAGGTATATTGTAATAATTAGCTTTGCCTTGGTGCTAATTATTGCCAGGGAAAGGGCCCAGGAGGTCCACTGCAAAGCTTTATGGTCATGCAGACATTAGTAAAACTCAAATTTGAGGTCCAAAGCTCCCCAAACACCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031167-12-11,13-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
3' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000038964





     
                   









    
Main Skipping Isoform:
ENSMUSP00000111280





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000111279, ENSMUSP00000111284
          









    
Other Skipping Isoforms:
ENSMUSP00000111277, ENSMUSP00000111280f2802A, ENSMUSP00000111282
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chrX:48435494-48435495 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chrX:91770812-91770813 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chrUn_random:970526-970526 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGATGGGGCATGCACACAAAA

				
R: 
CTTAGCCCCAGTGCCCCATAA

				
Band lengths: 
102-106

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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