MmuALTD0011928-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:108069172-108069801:-
Coord C1 exon
chr9:108069676-108069801
Coord A exon
NA
Coord C2 exon
chr9:108069172-108069282
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGATATCA
5' ss Score
-5.21
3' ss Seq
CTTAACTCAGTGGCACCTACCCA
3' ss Score
-12.14
Exon sequences
Seq C1 exon
GAATGGCGTGTCACTGGGCACTGCCTTCGAGAACCTTTCCAGGGGCCTAGGAATGGCGTACTTCCCAGCCATCAGCCTGTCATTCAAGGAGTCTGTGGCATTCAACTTTGGCAGCCGTCCTTTGCG
Seq A exon
NA
Seq C2 exon
CCAGTTGCGGGCTTCCGGCCCCTGCAGGACCCTCCGTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTTCCAGGCAGTGCTAAGTGTGGAGCTGGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528-26-36,27-36-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=PD(32.8=93.0)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCAACTTTGGCAGCCGTC
R:
CAGCCCAGCAACCTCTGTG
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types