MmuALTD0011928-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:107971503-107972132:-
Coord C1 exon
chr9:107972007-107972132
Coord A exon
chr9:107972003-107972006
Coord C2 exon
chr9:107971503-107971613
Length
4 bp
Sequences
Splice sites
5' ss Seq
TATCATTTT
5' ss Score
-34.45
3' ss Seq
CTTAACTCAGTGGCACCTACCCA
3' ss Score
-12.14
Exon sequences
Seq C1 exon
GAATGGCGTGTCACTGGGCACTGCCTTCGAGAACCTTTCCAGGGGCCTAGGAATGGCGTACTTCCCAGCCATCAGCCTGTCATTCAAGGAGTCTGTGGCATTCAACTTTGGCAGCCGTCCTTTGCG
Seq A exon
ATAT
Seq C2 exon
CCAGTTGCGGGCTTCCGGCCCCTGCAGGACCCTCCGTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTTCCAGGCAGTGCTAAGTGTGGAGCTGGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528-18-21,19-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=PD(32.8=93.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCAACTTTGGCAGCCGTC
R:
CAGCCCAGCAACCTCTGTG
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: