MmuALTD0011930-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:107965814-107966358:-
Coord C1 exon
chr9:107966252-107966358
Coord A exon
chr9:107966234-107966251
Coord C2 exon
chr9:107965814-107966012
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
ACCCCCTTTCTCTACCACAGCGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
ATGACCTTGCTTCCAAAGCCAACATCGTGATCGACCCCCTGGAGCTCCAGGCAGCCACCATGGATGACCTGGATGAGGATGAAGAGCCTGCCCCCTCAGCGGCCCAG
Seq A exon
GTGTGGCAGGAGGGACAG
Seq C2 exon
CGTCCGATGCAAGCCCTGGCCATCGGAGGGGCACTGCCCCTGCCCCGGCCAGGCTGGCTCAGTTCTCCAACCCTGGGCAGAGCCAACCGCTTCCTCAGCACGGCAGCTGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTCAAAGTTCGCTCACTGAATGTGGAACAGAGGACCCGTGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528-32-35,33-35-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGATGAAGAGCCTGCC
R:
AGGGTTGGAGAACTGAGCCAG
Band lengths:
110-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: