MmuALTD0012237-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000039087 | Rreb1
Description
ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]
Coordinates
chr13:37947016-37952000:+
Coord C1 exon
chr13:37947016-37947504
Coord A exon
NA
Coord C2 exon
chr13:37948643-37952000
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
TTCATTCTTTCATTGTTCAGGAG
3' ss Score
8.33
Exon sequences
Seq C1 exon
AGGAGGAGGAAGAAAAGGAGACAGAGGAGAACCCAGAGCCAGAGGAAGAGTGTCGTGTGGAAGAGAGCACTGGGGCTGCAGATGCCCCCGAGGAAGACACAGCCAGCAACCAGAGCCTGGATCTTGACTTCGCCACCAAGCTGATGGACTTCAAGCTGGCAGAGAGTGAGGCAGGCTCTGTGGACAGCCAAGGCCCAGCCCAGCAGGAGCCAAAGCATGCCTGCGATACCTGTGGAAAGAACTTCAAGTTCCTGGGCACCCTGAGTCGCCACAAGAAGGCACACAGCTGCCAGGAGCCGAAGGAGGAGGAAGCAGCGGCACCTTCGCTGGAGAATGAGGGCGTTGGCAGAGCGGTTGAGGGGCCCTCGCCTTCCCCTGAGCCTGAAGAGAAACCAGCCGAATCCCTAGCAATCGATCCAACACCAGGAACCAGGGAGGCCTCAGTGGCGAAACAGAATGAAGAAACAGAGGGTCCCACTGATGGGGAAG
Seq A exon
NA
Seq C2 exon
GAGAAAGGCCATACAAGTGTCAGACCTGTGAGCGAACCTTCACCTTAAAGCACAGCCTGGTTCGACACCAGAGGATCCACCAGAAAGCCAGGCACAGCAAGCACCACGGGAAAGACAGCGACAAGGATGAGCGGGCTGAGGAGGACAGTGAGGACGAGTCCACCCACAGTGCTACCAACCCTGCCTCTGAGAATGAGGCCGAGTCAGCTCCCAGCACCAGCAACCACGTAGCTGTCACCAGGAGCCGGAAAGAGAGCTTGTCCACTTCTGGGAAGGAATGTAGCCCAGAGGAGAGAGCCGCAGCTGAGCAGGCAGCTGAGCCCAGTGCCCCCAAAGAGCAGGCGTCTCCAGGTGAAACAGACCCCCAGAGCCCGGCAGCCATCGTGCAAGACTTGCTGGAGCTGTGCGGCAAGAGGCCTGCCCCAATCCTGGCGGCCACCGACGGGGCCTCACAGCTCCTGGGCATGGAGTGACAGCCCGCCCTGTCTCCATCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039087-38-45,39-45-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=0.972
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=14.1)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(56.0=8.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTCGCTGGAGAATGAGG
R:
TCTGGTGGATCCTCTGGTGTC
Band lengths:
255-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types