MmuALTD0012395-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000030433 | Sbk2
Description
SH3-binding domain kinase family, member 2 [Source:MGI Symbol;Acc:MGI:2685925]
Coordinates
chr7:4914533-4916003:-
Coord C1 exon
chr7:4915903-4916003
Coord A exon
chr7:4915750-4915902
Coord C2 exon
chr7:4914533-4914787
Length
153 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TCCTTTTGTCTGTCTTGCAGAAA
3' ss Score
11.96
Exon sequences
Seq C1 exon
GATGCTGGCAGGAACCCCCGAAGTGCAAGGCGCTAACTGCAGTAGGCAGAAAGGGATCAGACAAGCCTTGGAGAAGGCGAAGTCTGGAGCTCTGAGCCCAG
Seq A exon
GTCAGAAGTAGGGCAAGGTTAACCGGCCTGAGGGAAGGCTGCAGTTGAACAGGAAAACAGGTGGCAAGAGTCCTGGCCCCTCGACAGGACAAGAGACACCTTGAAGCAATCGAGTGCTTTAGTGTTGGGGACAGAATCCAAGGCCCAAGTTGT
Seq C2 exon
AAATGCCAGGCAAACAGTCAGAAGACAAGCCAATGGAAGTGTCAACTGTGGAGGATGGAGGTGATGAAGGCCTGGGAGGCCTAACGGTAGAGGAGCTGCAGCAGGGGCAGGAGGCTGCTCTGGCCTTGGAGGACATGATGGCTCTGAGTGCCCAGACCCTGGTCCAAACTGAGGTGGAAGAGCTGTACGAGGAAGTGCGTCCCCTGGGCCAGGGCCGGTTCGGCCGTGTCCTGCTGGTTACTCACCGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030433-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.341
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(8.6=27.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATCAGACAAGCCTTGGA
R:
TCCTCGTACAGCTCTTCCACC
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: