MmuALTD0012474-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000008226 | Scrn3
Description
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
Coordinates
chr2:73319400-73322194:+
Coord C1 exon
chr2:73319400-73319499
Coord A exon
NA
Coord C2 exon
chr2:73321985-73322194
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
TTTCTGCCCTTTACCAATAGGCG
3' ss Score
9.9
Exon sequences
Seq C1 exon
AAAGAGTTCAGCTATTACAACAGTTTCCTGATAGCTGACAGGAATGAAGCCTGGATCCTGGAGACGTCGGGGAAGTACTGGGCAGCAGAGAGAGTCCAAG
Seq A exon
NA
Seq C2 exon
GCGTTCGTAATATTTCCAATCAGCTTTCCATAACAACCAAGATTGACCGGGAACATCCAGACATGAGGAACTACGCTAAGCAGAGGGGCTGGTGGGATGGCAAAGAAGAATTTGATTTTACTGCGGCCTATTCTTACATTGACACGGCTGCTATGATGACTTCACCAAGCAGGTACTGCCAGGGCTACAAGCTTCTGGATAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008226-10-13,11-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(26.4=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(29.1=95.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACTGGGCAGCAGAGAGAG
R:
TCATGTCTGGATGTTCCCGGT
Band lengths:
93-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types