MmuALTD0012571-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026121 | Sema4c
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:MGI Symbol;Acc:MGI:109252]
Coordinates
chr1:36612777-36613774:-
Coord C1 exon
chr1:36613648-36613774
Coord A exon
chr1:36613342-36613647
Coord C2 exon
chr1:36612777-36612925
Length
306 bp
Sequences
Splice sites
5' ss Seq
GGGGTATAT
5' ss Score
2.46
3' ss Seq
ACCAGTTTCTTTTCCTTCAGCAG
3' ss Score
6.66
Exon sequences
Seq C1 exon
GAGAACCCCGCTTCGGCCTCCCCAACCCATTTCACTTCCCTCCACGATCCCGCTCTCGCGGAGGCGAGGAGATTCCCAGACAGAAGCCTGGAACTGACTCGTGGCCCGGTCGCCTCTCTGCGGGAGG
Seq A exon
GTCAGTGTCTTGTAGAAGGCTGTTGGAGAAACAGGACTGGTCCTGGTCATTTCCACGCCCATCCCACCCACTTCCTGCCTCCCTCTTGGGCAACAAAGGGGCCTCGGAAGCTGGGCCCATTTGGTTCCCGGCCCCACTCCTACTCCAGCCCTGCTGATGTGGAACCGGGTTTGGGCTCTGCCCGGCTATTGTCTGCGCTGGGGGAGGGGACGGGCTGGGGCCGGGAACTCTACACGCTGCCTGCTTCACCAAGTCCCCCACTGAAGCTCTTTGCCCAACCGGCTGCCTGCGGCTGCTGAATAAGGG
Seq C2 exon
CAGGGCTGCTGGACTGAAGTTTAGACCCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAGGGCTGTGGGGCCTGGGCATCGGGGCTGAGATGTGGTGGAACCTTGTGCCCCGGAAGACAGTATCTTCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026121-2-5,3-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCCAACCCATTTCACTT
R:
AAGATACTGTCTTCCGGGGCA
Band lengths:
254-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: