MmuALTD0012666-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000054766 | Set
Description
SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
Coordinates
chr2:30070441-30072577:+
Coord C1 exon
chr2:30070441-30070470
Coord A exon
chr2:30070471-30070601
Coord C2 exon
chr2:30070919-30072577
Length
131 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
ACTGCTCCTTGTTCTTTCAGGAG
3' ss Score
11.53
Exon sequences
Seq C1 exon
GTTCCCGACATGGATGATGAAGAAGGAGAG
Seq A exon
GCAGAAGATGATGATGACGACGACGAAGAGGAGGAGGGGCTGGAAGATATTGATGAAGAAGGAGATGAGGATGAAGGTGAAGAAGATGACGATGAGGATGAAGGGGAGGAAGGAGAGGTAAGGAAGGAGAG
Seq C2 exon
GAGGACGAAGGCGAGGATGATTAGCACAGAAGACTGATGGATTCCAACCTTCTTTTTTATTTTCTTTTTATTTTTTAATTTTCTCCAGTCCCTGGGAGCAAGTTGCAGTCCTTTCCTCCCTGTCCCTCTGTGCTCAGTCGCCCTGTTTTGAGGTCTCAACATCATGGTTCTCAATTAATTTGGGGGGAAGTATCTTGAGCAAAATACAACAGGAAAAGAATCTCCGTTTCTGTTCTTAATTCATTTTTTATCCTTTCTTGTCTAAATTTGTGGATTCCACACCACCATGCTCTGTGGGAAAAAAGAAAAGCCCTCCAGTTCCCTTGGCTCTGCTGGAGGGCGCTAGGCCCCTGTGTAGTAGTTTATAGAATTTTAGCTTTTCTTCTTTTCTCTGTATATTGGGCTCAGAGATTACACTGTGTCTCTATGTGAATACAGACAGTTAGCATTTACCAACATGTATCTGTCTACTTTCTCTTGTTTAATAAAAAGAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054766-29-20,30-20,31-20,33-20-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACATGGATGATGAAGAAGG
R:
ACGGAGATTCTTTTCCTGTTGT
Band lengths:
254-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types