MmuALTD0013097-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000028962 | Slc4a2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Coordinates
chr5:23940156-23940567:+
Coord C1 exon
chr5:23940156-23940309
Coord A exon
chr5:23940310-23940321
Coord C2 exon
chr5:23940453-23940567
Length
12 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
CCTCCCATCCCGTCCCCCAGCGT
3' ss Score
7.59
Exon sequences
Seq C1 exon
CCACCCAAGTGACGAGAAAGAGTTCTCCTTCCCCCGAAACATCTCAGCGGGCTCTCTAGGCTCTCTACTGGGGCATCACCATGCCCAGGGGACCGAGAGTGATCCTCATGTCACTGAGCCTCTCATTGGTGGTGTTCCTGAGACCCGACTGGAG
Seq A exon
GTGGATAGAGAG
Seq C2 exon
CGTGAGCTACCACCCCCAGCACCACCTGCAGGTATTACCCGCTCCAAGTCCAAGCATGAGCTGAAGCTGCTGGAGAAGATCCCTGAGAATGCGGAGGCTACAGTGGTCCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028962-26-20,27-20-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.462
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(20.4=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGCCTCTCATTGGTGGT
R:
CTCATGCTTGGACTTGGAGCG
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: