MmuALTD0013449-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36109237-36111598:+
Coord C1 exon
chr15:36109237-36109337
Coord A exon
chr15:36109338-36109516
Coord C2 exon
chr15:36111451-36111598
Length
179 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGTT
5' ss Score
2.4
3' ss Seq
TTTTTTACATTATGTTTCAGCCA
3' ss Score
8.18
Exon sequences
Seq C1 exon
CACGGGGGTGGAGTTGCCGCACTGTGGTTTCCTGGGGACAGCCATCTGCTTCAGCCCCCAGCCCAAGCCGGAGGAAGGACTCCCTGCGCCAAAGCTTGCAG
Seq A exon
GTTGGCCCAAGAGCTAGTTCCCAGGCTCGTCCTAGACACTTTACCTGGGTCTGGCGGTGCCTGGAAACCGTTGCCATGGCTGGGGCGTGCCACTTCCGTTTCTGGCTGCAGAGGGCGCCGGCTGCCTGAGTAGGAGAAGCTGAGTTTTCACGTTACTGGGGTTACCAGGAAACGCTATG
Seq C2 exon
CCATGACTGCTAAGGCTAAGGACTGTCCATCATTGTGGGGCTTTGGAACAACAAAAACATTTAAAATTCCCATCGAACATTTGGATTTCAAGTATATTGAAAACTGTTCAGATGTGAAACACCTGGAAAAAATTCTTTATGTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-1-0,2-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTTGCCGCACTGTG
R:
AGGTGTTTCACATCTGAACAGT
Band lengths:
218-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: