MmuALTD0013449-6/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36179482-36181843:+
Coord C1 exon
chr15:36179482-36179582
Coord A exon
chr15:36179583-36180063
Coord C2 exon
chr15:36181696-36181843
Length
481 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TTTTTTACATTATGTTTCAGCCA
3' ss Score
8.18
Exon sequences
Seq C1 exon
CACGGGGGTGGAGTTGCCGCACTGTGGTTTCCTGGGGACAGCCATCTGCTTCAGCCCCCAGCCCAAGCCGGAGGAAGGACTCCCTGCGCCAAAGCTTGCAG
Seq A exon
GTTGGCCCAAGAGCTAGTTCCCAGGCTCGTCCTAGACACTTTACCTGGGTCTGGCGGTGCCTGGAAACCGTTGCCATGGCTGGGGCGTGCCACTTCCGTTTCTGGCTGCAGAGGGCGCCGGCTGCCTGAGTAGGAGAAGCTGAGTTTTCACGTTACTGGGGTTACCAGGAAACGCTATGGTAGTTTGCACAGGAGATATTACTACTACACTGATTAGGAAATACAGGAAATGAATGTGAGCAGGGTGATGGCAAATAAATCAGACCCAGCCATGATCAAGCTTTTAGACAGAAAGACTGAAAAGAAATACGGAAAAATTCTCCCGAGAACAATCTAAATGCCCAGAAAGCTAACATTTCTAATTGCCACAGGTTTAAGGATTTTACACAGGGAAATAAAAAGAAAGAAAGAAACATACTTCAGAAGAACTTAGAAAAGCTTGTGAGTCTTGATGAATGTGCTTTTATTGCGTAGTGTGAAC
Seq C2 exon
CCATGACTGCTAAGGCTAAGGACTGTCCATCATTGTGGGGCTTTGGAACAACAAAAACATTTAAAATTCCCATCGAACATTTGGATTTCAAGTATATTGAAAACTGTTCAGATGTGAAACACCTGGAAAAAATTCTTTATGTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-0-0,1-0,2-0,3-0,4-0,5-0-6/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGCCGCACTGTGGTTTC
R:
AGGTGTTTCACATCTGAACAGT
Band lengths:
215-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types