MmuALTD0013667-3/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:31089402-31090538:-
Coord C1 exon
chr9:31090442-31090538
Coord A exon
chr9:31090402-31090441
Coord C2 exon
chr9:31089402-31090027
Length
40 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TATTTATTTATTTTGCGTAGGGT
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTACCGGAGCGCTGATCCTGCAGAAGGGTGAGATCCGTGTCATCAACCAGACCACCTGTGAGGACCTCATGCCGCAGCAGATCACCCCACGAATGAT
Seq A exon
GTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
Seq C2 exon
GGTGACTCTGGTGGCCCCTTGTCAAGCGCGGAGAAAGATGGGCGAATGTTCCAGGCTGGTGTGGTGAGCTGGGGTGAAGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGCTCCCTGTAGTTCGGGACTGGATCAAAGAGCACACTGGGGTATAGCAGCATGGACAGACAGCCGACCACAAACACCCACAGGGATGCCCGACATGCACACCTGGATACAGGAGAGGAACACTGACGACATTTATGCTGTGGCCTCCCCCCCCCAACACAACCCAGACTGTGAACTGCATCCTTAGGACTCAGAGTTCTTCCAAAGTGGGACCCCCTCAAGAGTTGGAGAGAGAACTTGCGTGCTAGCGGCCCAGCCTGGGGGCAAGGGTTTGATGGCAGCCTTCCCCCTCTAGCCCTGAGCTGGGTGAAGATGATGCTGTCCCGGAGAGCTGCTTCCAACTGTCATTGAGCTCCCGGGAGCCCTATGGGAGGAGGGGCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995-40-26,41-26,42-26,43-26,44-26,45-26-3/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGAGATCCGTGTCATCA
R:
CCACACCAGCCTGGAACATTC
Band lengths:
137-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types