MmuALTD0013862-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036160 | Surf6
Description
surfeit gene 6 [Source:MGI Symbol;Acc:MGI:98447]
Coordinates
chr2:26888628-26892173:-
Coord C1 exon
chr2:26891991-26892173
Coord A exon
NA
Coord C2 exon
chr2:26888628-26889378
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TGCTTTTGTTTACTCTGCAGTGG
3' ss Score
7.03
Exon sequences
Seq C1 exon
GTGGTGCTAGTGCAGGTCTAGGCAACAGACTGGGTCTCCTGTGTGAGGTCAACACAGTTCTTGCACCCCACAACCATAGTGAGATCTCTGACTGTGTGCCTGGTTGTTTCATCAGCATCTTTAAGAAGGACCGTGTCCTCCAGGCCCTGAGAGGGATAGAGGGGATCTCCCATGTTTGGAGAG
Seq A exon
NA
Seq C2 exon
TGGACTGACTGCCACAGTGTGCTGTGTGCCTTGAGTCACTTCAGTGGAGACTGCAATATGGAGAACCCAGAGGAGGCCTGAGTGAGATCCCAATGACATCTTCTGTGATTCTGCCTGGTTACTGGATTTTCTTCATCTTGTTACCACAAGAGGCATAAACTCCTCTTCCTTGTATAAGACTGTTTTTCTATCAAAGGTAGTTAACAAAGGCCCATATTGACTTAACTGCCCCAAGCCCCTTCTCACCACTTAGACTTGTGAGATTATGAAGTCATTCCTTCACCAATGGGAAGAGACACAGTCACCTGTACTCAGGATAAGAGACAAAGGCTGTCTTAGTTATTGCTGTGGCAAAACAGTATGTTCAAGGCAATTTACAGAGGAATGTCAGAAAGTTCATGACCATTATGTATACCATAGCAGCAGGCAGGCAGGCAGGCATGGTGCTGGGGCAGTATTGAGAACTCACATTTGACCTACAAGAAGGTGGCAGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036160-10-11,11-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF049357=SURF6=PD(69.2=92.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
ENSMUST00000114043fB3986
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTGTGTGCCTGGTTGTT
R:
CACACTGTGGCAGTCAGTCC
Band lengths:
117-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types