MmuALTD0014043-3/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000006095 | Tbcb
Description
tubulin folding cofactor B [Source:MGI Symbol;Acc:MGI:1913661]
Coordinates
chr7:31016145-31016699:-
Coord C1 exon
chr7:31016599-31016699
Coord A exon
chr7:31016377-31016598
Coord C2 exon
chr7:31016145-31016288
Length
222 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ATCTTGCCTCTTTACTGCAGTGT
3' ss Score
7.09
Exon sequences
Seq C1 exon
GGATATCGGCGCCCACCGTGATGGTTTTCATCAGCAGCTCCCTCAACAGCTTCCGTTCGGAGAAGCGATACAGTCGTAGCCTCACCATCGCAGAGTTCAAG
Seq A exon
GTGTGGCCGTGGGGGCGGGGTCCGGAGGGGCGGGGCAAAGAAAAGGGAGTAGGGGGCTGAAAACTAGTGGGCGAACCTGGAGGGAAGGTTGCAGAGACTGACAGCCAGCCTCCCAGGCCTGGGAGCCCCGGAGAACAGAGTCCACCGAGTAGGGGCAGGACCCGGGAAAAATCAGACACTCCAGAGAGCCGAGGGGGCGGGTCCAGAAGGAACTGGTCCAAG
Seq C2 exon
TGTAAACTGGAGCTGGTGGTGGGCAGCCCTGCTTCCTGCATGGAACTGGAGCTATATGGAGCAGACGACAAGTTCTACAGCAAGTTGGATCAGGAGGATGCACTGCTGGGCTCCTATCCTGTGGATGACGGCTGTCGCATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006095-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145601=Ubiquitin_2=PU(32.9=73.7)
A:
NA
C2:
PF145601=Ubiquitin_2=FE(55.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTTCATCAGCAGCTCCC
R:
GATGCGACAGCCGTCATCC
Band lengths:
221-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: