MmuALTD0014672-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026848 | Tor1b
Description
torsin family 1, member B [Source:MGI Symbol;Acc:MGI:1353605]
Coordinates
chr2:30809272-30811473:+
Coord C1 exon
chr2:30809272-30809528
Coord A exon
chr2:30809529-30809537
Coord C2 exon
chr2:30811298-30811473
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
3' ss Seq
TCTCTTTGAGGTTGGTCCAGGAC
3' ss Score
0.67
Exon sequences
Seq C1 exon
CCCTCAAGCTGGACTTGGAAGAGAAGCTGTTTGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCAGGAACAACAAAAATTCCAAGAAACCATTGACTCTGTCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTTTATCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTCTCTACTTTGCACTTCCCTCATGAGCAGAAGATAAAG
Seq A exon
GTGTACCAG
Seq C2 exon
GACCAGCTCCAGAAGTGGATCCGAGGCAATGTGAGTGCGTGTGGCAGCTCCGTCTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGGATCATTGATGCAATCAAGCCCTTCCTGGACTACTATGAGCAGGTGGATGGGATTTCCTACCGCAGAGCCATCTTCATCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026848-2-2,3-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(85.0=100)
A:
NA
C2:
PF063096=Torsin=PD(15.9=33.9)
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACTTCCCTCATGAGCAG
R:
AAAGATGAAGACGGAGCTGCC
Band lengths:
93-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: