MmuALTD0014885-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026812 | Tsc1
Description
tuberous sclerosis 1 [Source:MGI Symbol;Acc:MGI:1929183]
Coordinates
chr2:28641190-28652231:+
Coord C1 exon
chr2:28641190-28641290
Coord A exon
chr2:28641291-28641319
Coord C2 exon
chr2:28652169-28652231
Length
29 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTATGTGTTTTTCCCTTCAGTGA
3' ss Score
9.95
Exon sequences
Seq C1 exon
TTTTTCATAGCGGAGGCCCCCGCCGCTCGAGACGCTTCACGCCAGGGGGAGGTGCTGCGCGTCCAAGATGGCGGCGCCCTGTAGGCTGGAGGGACTGTGAG
Seq A exon
GTAAACAGCTGAGGGGGAGGAGACGGTGG
Seq C2 exon
TGACCATGAAAGATACCAGGCTGACGGCACTGGAAACTGATGTACCATCTGTCCCCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026812-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCATAGCGGAGGCCCCC
R:
GCCGTCAGCCTGGTATCTTTC
Band lengths:
128-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types