MmuALTD0015006-1/5 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000025474 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:MGI Symbol;Acc:MGI:1921487]
Coordinates
chr7:147219512-147222346:-
Coord C1 exon
chr7:147222246-147222346
Coord A exon
NA
Coord C2 exon
chr7:147219512-147219697
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCTTTCTTTCTGCCTTCAGGAA
3' ss Score
12.72
Exon sequences
Seq C1 exon
GGCCGCCGCGGCCCTTCGGCCACCGTCGGAGGGGTGGTGACGGACGTGACGTCTACTAACTTCCTGTGGCGACCCTGCGGGGCGGGACGCGACGCGCGGAG
Seq A exon
NA
Seq C2 exon
GAAAACTTGGTTATGTTGGTGTCTCAGAGCTAAACTATGAGCGAATTTCGGATTCACCATGATGTCAATGAGCTGCTCAGCCTGCTCCGCATCCATGGCGGGGATGGGGCTGAGGTCTACATTGACCTGCTGCAGAAGAACCGGACGCCGTATGTCACAACCACAGTCTCTGCCCACAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025474-0-0,1-0,2-0,3-0,4-0-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAACTTCCTGTGGCGACCCT
R:
AGCAGCTCATTGACATCATGGT
Band lengths:
123-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: