MmuALTD0015069-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026956 | Uap1l1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 [Source:MGI Symbol;Acc:MGI:2443318]
Coordinates
chr2:25364512-25365085:-
Coord C1 exon
chr2:25365060-25365085
Coord A exon
chr2:25364881-25365059
Coord C2 exon
chr2:25364512-25364687
Length
179 bp
Sequences
Splice sites
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
3' ss Seq
CACTGCTAGGACATTTACAGGTA
3' ss Score
-0.4
Exon sequences
Seq C1 exon
GTTTCCGACAGATTTCTCTGAACAAG
Seq A exon
GTAGCTGTCCTGCTGCTGGCGGGTGGGCAGGGCACTCGCCTGGGCGTCACATACCCAAAGGGCATGTATCAAGTTGGGCTGCCCAGCCAGAAGACCCTGTATCAACTGCAAGCAGAGCGGATCCGGCGTGTCCAACAGTTGGCTGACCAGCGACAGGGGACCCACTGCACTGTGCCCTG
Seq C2 exon
GTACATCATGACCAGTGAGTTTACCCTGGGACCCACAATCAAGTTCTTCAAGGAGCATGACTTCTTCCACCTGGACCCCACTAACGTAGTGCTGTTCGAGCAGCGCATGCTACCTGCTGTGACCTTTGAGGGCAAGGCCATCCTGGAACGGAAAGACAAAGTTGCCATGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026956-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(17.5=100)
A:
NA
C2:
PF0170413=UDPGP=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types