MmuALTD0015072-3/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20235552-20245691:+
Coord C1 exon
chrX:20235552-20235652
Coord A exon
chrX:20235653-20235854
Coord C2 exon
chrX:20245575-20245691
Length
202 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TGGCCTGTCTTTCTCCCCAGATG
3' ss Score
12.79
Exon sequences
Seq C1 exon
CTCTGGTTCTTTTTGCACGATCGAGGTGGTTTGCTCTTCCGTTGCCCTGTGGCTTCGGCTTGTCTCCAGAAGGAAGGCGAGGCTTCCGCCCAGCACTGGGG
Seq A exon
GTGAGCGGGAGCACATTTCCCCCAAGCCTCTGGACAGCATTTGGAAGAGGGTGCTTCCCTAATTCCAACTTCAGGGATCCCTAATGGGCATGTTTGGAGGTTGTGGGGCCCGGGTGGCATTCAGTGGGTGTCTACTTTTGAGGAGACACTTAGGAAGCGGTGCTTGGGGATTCGGGTGGCATTTAGGAGTCTGTTTTATGAG
Seq C2 exon
ATGTCCAGCTCGCCGCTGTCCAAGAAACGTCGCGTGTCCGGGCCTGATCCAAAGCCGGGTTCTAACTGCTCCCCTGCACAGTCTGCGCTGTCCGAAGTGTCCTCAGTGCCAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-0-5,1-5,2-5-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTTCTTTTTGCACGATCGA
R:
GGTTGGCACTGAGGACACTTC
Band lengths:
214-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: