MmuALTD0015552-2/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000048832 | Vps37c
Description
vacuolar protein sorting 37C (yeast) [Source:MGI Symbol;Acc:MGI:2147661]
Coordinates
chr19:10763286-10780798:+
Coord C1 exon
chr19:10763286-10763386
Coord A exon
chr19:10763387-10763469
Coord C2 exon
chr19:10780700-10780798
Length
83 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
GTATTGCTTTGTGTTTGCAGGAG
3' ss Score
8.42
Exon sequences
Seq C1 exon
GCGTCTGAGTGCAGGTATCGTGGCCACCCCTAGGCCTACAAGGCAGGACACTCGGGGCGCGGCGGAGGGGCAGTGCGGCTCGTTCTCAGCTGGACGCGGGA
Seq A exon
GTAAGTCACATCCGGTAGAGGCGGGGCTCGTGGATCCCGGAAGTGCGGGCAGCGGCTGATTGCCCGCGGTAGCGGCGGCCCCG
Seq C2 exon
GAGAAGATGGAGGGGCTGAAAGACAAGACCCTGCAGGAGCTGGAGGAAATGCAGAATGACCCAGAAGCCATTGCCCGGCTAGCCTTGGAGTCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048832-1-0,2-0,3-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.774
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF072008=Mod_r=PU(18.0=87.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGAGTGCAGGTATCGTG
R:
GGCAATGGCTTCTGGGTCATT
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: