MmuALTD0015552-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000048832 | Vps37c
Description
vacuolar protein sorting 37C [Source:MGI Symbol;Acc:MGI:2147661]
Coordinates
chr19:10688796-10706308:+
Coord C1 exon
chr19:10688796-10688896
Coord A exon
chr19:10688897-10688983
Coord C2 exon
chr19:10706210-10706308
Length
87 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
GTATTGCTTTGTGTTTGCAGGAG
3' ss Score
8.42
Exon sequences
Seq C1 exon
GCGTCTGAGTGCAGGTATCGTGGCCACCCCTAGGCCTACAAGGCAGGACACTCGGGGCGCGGCGGAGGGGCAGTGCGGCTCGTTCTCAGCTGGACGCGGGA
Seq A exon
GTAAGTCACATCCGGTAGAGGCGGGGCTCGTGGATCCCGGAAGTGCGGGCAGCGGCTGATTGCCCGCGGTAGCGGCGGCCCCGGTAG
Seq C2 exon
GAGAAGATGGAGGGGCTGAAAGACAAGACCCTGCAGGAGCTGGAGGAAATGCAGAATGACCCAGAAGCCATTGCCCGGCTAGCCTTGGAGTCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048832-1-4,2-4,3-4,4-4-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.774
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF072008=Mod_r=PU(18.0=87.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGAGTGCAGGTATCGTG
R:
GGCAATGGCTTCTGGGTCATT
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types