MmuALTD0015917-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:161029642-161032761:-
Coord C1 exon
chr1:161032069-161032761
Coord A exon
NA
Coord C2 exon
chr1:161029642-161029741
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TTATGCTCCTTTTCCAACAGATT
3' ss Score
10.67
Exon sequences
Seq C1 exon
TCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAGCAACTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGCAGATATCATCAGCTACCTAACAGCTGCTAGTTTTCTGCAGATGCAGCATATTATAGACAAATGTACGCAGATCCTAGAGGGCATTCACTTCAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCATAGGGCTACACCAAATCTAAACCGCTCACTTAGTCCACGGCATAATGCCTCAAAGGGAAACTGGAGAGGGCAGGTCAGTGCCGTGCTGGATATCCGAGAGCTCAGTCCCCCGGAGGAGCCCACCAGTCCTCAGATAATTGAACAGAGTTCTGATGCAGAAGGCCGGGAGCCCATTCTTCGAATCAACAGAGCAGGACAGTG
Seq A exon
NA
Seq C2 exon
ATTTAGTCCCTCCGGCAGTGTTGTTTCCATGACAGAAAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAGCCTAAGCAACTTAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467-5-5,6-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGCTGAGGTTGAAGCAG
R:
ACACTGCCGGAGGGACTAAAT
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types