Special

MmuALTD0015926-1/3 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:151399887-151400553:-
Coord C1 exon
chr4:151400497-151400553
Coord A exon
NA
Coord C2 exon
chr4:151399887-151400128
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TGCTGCCTCCTCTGCTCTAGTGG
3' ss Score
7.21
Exon sequences
Seq C1 exon
GAGCCCCCAAGGCCCTTCGAGGCTGGAGGTGCCCCGCTGCAGGGCGAGAGCAATGAG
Seq A exon
NA
Seq C2 exon
TGGGAAGTGGTGGTCCAAGTGGAGGACGACAGGGACGGTGATTACGTATCTGAGCCTGAGACTGTGCTAACCAGAAGGAAGTCAAAAGTGATTAGAAAACCCTGTGCAGCCGAGCCAGCCCTGGGTGCGGGTTCTCTCACAGCCGAGCCCACTGACAGCAGAAAAGGTGCAGCCGTTCCGGTCGAATGTCCCACATGTCACAAAAAGTTCCTCAGCAAATATTACCTGAAAGTCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-3-3,4-3,5-3-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.465 A=NA C2=0.461
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0065126=BTB=WD(100=46.6)

							
A:
NA

							
C2:
PF100834=DUF2321=PU(41.1=45.7),PF145221=Cytochrome_C7=PU(47.1=40.7),PF134651=zf-H2C2_2=PU(24.0=7.4)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000067521





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000114726, ENSMUSP00000117079
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:6641360-6641361 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:47667810-47667811 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCCTTCGAGGCTGGAGGTG

				
R: 
GACATGTGGGACATTCGACCG

				
Band lengths: 
244-401

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"