MmuALTD0016019-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:68187051-68212844:-
Coord C1 exon
chr15:68212614-68212844
Coord A exon
chr15:68212593-68212613
Coord C2 exon
chr15:68187051-68187236
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TTTTGGCATTTGCTTCCTAGGTA
3' ss Score
8.47
Exon sequences
Seq C1 exon
AGTTTTTGGTTATGAAGAGAAAGAGAGGGAGGCCTAAGGGTTCCACAAAGAAGCCCAGCACTGAAGAGGAGGTGGTAGAAAACCTCGTGAGCCCCAGTGAGGACGGTCCCCTGGCTACAGAGGAAGGGAGCAGACTGGCCCCCAGCAGCTTGGAGTGTAGCAAGTGCTGCCGGAAGTTCTCCAACACACGCCAGCTGCGCAAGCACATCTGCATCATTGTGCTGAATCTGG
Seq A exon
GTGAGGAGGATGGAGATGCAG
Seq C2 exon
GTAACGAGTCAGACCTTGATCTAGAAAAGACATACAAAGAAGATGATCGAGAAAAGGCTTCAAAAAGACCCCGGGCTCAGAAAACAGAGAAAGTCCAGAAGATCTCAGGAAAGGAGGCAGGGCAGCTTTCTGGAGCGAAGAAACCCATCATCAGCGTGGTCTTAACTGCTCATGAAGCAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335-11-4,12-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGCACATCTGCATCATT
R:
CCGGGGTCTTTTTGAAGCCTT
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types