MmuALTD0016024-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000030016 | Zfml
Description
zinc finger, matrin-like [Source:MGI Symbol;Acc:MGI:1203484]
Coordinates
chr6:83864373-83880159:+
Coord C1 exon
chr6:83864373-83864473
Coord A exon
chr6:83864474-83864483
Coord C2 exon
chr6:83878647-83880159
Length
10 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
ATTTGTGTTTTAACTTTCAGCTT
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCATGCGTGTAGTCCCATGGAGGCGGTAGCTGCTTCATCGCGGTGACTGGAGGCCGAGTGCTAAACTGTGTGGGGCACGGATGGGATCCAGCTGTTAGTCG
Seq A exon
GTAGGCATAG
Seq C2 exon
CTTTGTGTTATTCTTGGAAAATTTCGCACCACTTGTGAATTCCTTGAGCCTGGGCATTGCGAGCCCACTTCTGTTGGGCCCGTCTCCTTTGCGCTTTGCTCAGATTGAGACTCAGTTGGCGCTTCAGCAGCTGAATGCCGTTGCCTCCCATGGTTCAACACCACCTTATACTTTTTTAAATCAGGCATTCTTGAAAGTAGCCATGTCGAGACCCAGGTTTAATCCTCGAGGGACCTTTCCACTTCAAAGGCCACGAGCACCTAATCCTCCTGGGATGAGGCCTCCAGGACCATTTGTGAGGCCTGGCTCTATGGGTCTTCCAAGATTTTACCCAGCAGGGAGAGCCCGTGGAATTCCACACAGATTTCCTGGCCACGGATCTTATCAGAACATGGGACCACAAAGAATGAATGTTCAGGTAACTCAACACCGAACCGATCCAAGATTAACCAAAGAAAAATTGGATTTTCCTGAAGCACAACAAAAGAAGGGGAAGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030016-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.677
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGCTAAACTGTGTGGGG
R:
CAATGCCCAGGCTCAAGGAAT
Band lengths:
106-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: