MmuALTD0016034-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000052675 | Zfp112
Description
zinc finger protein 112 [Source:MGI Symbol;Acc:MGI:1929115]
Coordinates
chr7:24123919-24127952:+
Coord C1 exon
chr7:24123919-24124002
Coord A exon
NA
Coord C2 exon
chr7:24124835-24127952
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GATTCTCTTCCTCCTCGTAGGAA
3' ss Score
9.75
Exon sequences
Seq C1 exon
CACATCAGCCCTTCAAACCGGGTCTGATAGCCCAGCTGGAGAATGGAGAGCAGCTTTGGATGGTGGAGGCTGAAGCCCATGCAG
Seq A exon
NA
Seq C2 exon
GAAGAAGAAATGGACATGCTGTGGAGAACGCTGAAGACGTGGAAGTAAACTCCCTTTGTCCCGAGGACCTCTCCTTCTGTCAGACCTGGCCGTGGGGTGCATGCACATTACCCAGTGGTCAAGAGTTCATAAAAAGATGCCAAGGGAGTAATGGTGAATCTCAGAGCCAAGAAGCTTCCCCTCGCCTGGTGTGGGCAGGAATGCCCATGCAGATTTCTGAAGACGGGAATTACGGATTGCCTCCTGCACACGAAGACTCTGCTTCTATGAAAAATCAAGAGTTTCCTCCTCCAAGATCCCAGCAGTCTCAGGGGGAACCATATCTCGGCAGGCCATGTGTGACATGCCAGTGGAAAGGTCAGCAAACATCCATAAGAAATCACTTCTGTAGGTATGGCAGTGTCTGCTGGTCCCCCTACCACAGTGACAATGAGGAGCTATACAGCAAAGGAAAAAGCTATGGTTTCCATGACGACAGAGGAAAGACGGTGAAGGTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052675-5-6,6-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=NA C2=0.241
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGATAGCCCAGCTGGAGA
R:
CTTCAGCGTTCTCCACAGCAT
Band lengths:
99-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types