MmuALTD0016036-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000068134 | Zfp120
Description
zinc finger protein 120 [Source:MGI Symbol;Acc:MGI:1345179]
Coordinates
chr2:149940142-149945364:-
Coord C1 exon
chr2:149945301-149945364
Coord A exon
chr2:149945217-149945300
Coord C2 exon
chr2:149940142-149943936
Length
84 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
3' ss Seq
TATGCCAATTCTCTTTGCAGGCA
3' ss Score
9.92
Exon sequences
Seq C1 exon
GCTACTATTGGAAAGGCCATAATATTTCTGAAGGACATTTTCAAAATTCTAGAAGAAACGGAAG
Seq A exon
GTAATTTTCACGTGCAAGCTGATAAGAAATGCCTCTGAAGAATGTTTTTAGTATGTCCTGCAAGTTTTAAAGAAAACCAACAGG
Seq C2 exon
GCATGAAAGAAGTGATACTGAAGAGAAACTTTCTGAATTTACTCAATATGATAAAGACTTTGCATATCAGAGCCATCCTCAAAGGCATGAAAGAATTTATTCTGGAGAGAAACCCTATGAAGGTGTCCAATATTTTGAAGACTTTGCACATCACAGTAGTCTCCAAATACAGAGAAGAACACATGTTGTAGAAAAACCCTATGAGTGTAACCAATGTGGCAAAGCCTTTGCATACCACAGTTATCTTCAAAGGCATGAAAGAAGTCATACAGGAGAGAAACCTTATGAATGTAATCAATGCGGTAAAGCCTTTGGACGGCACAGTCATCTTCAGAGACATGAAAGAATTCATACAGGAGAAAAAAGCTATGACTGTAATCAATGTGGTAAAACATTTGTACATCACAGTCATCTTCAAATACATAAAAGAACACATATTGGAGAGAAACCCTTTGAATGTAACCAATGTGGTAAAGCCTTTGCACGAAACAGTCATCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068134-2-2,3-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATAATATTTCTGAAGGACA
R:
ACACCTTCATAGGGTTTCTCTCCA
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: