MmuALTD0016043-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036898 | Zfp157
Description
zinc finger protein 157 [Source:MGI Symbol;Acc:MGI:1919404]
Coordinates
chr5:138454980-138456327:+
Coord C1 exon
chr5:138454980-138455089
Coord A exon
chr5:138455090-138455093
Coord C2 exon
chr5:138455879-138456327
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
3' ss Seq
ATTCTTTTGTCTCAAGGCAGAAA
3' ss Score
2.48
Exon sequences
Seq C1 exon
GTGTTCTTGAAGTTTATACTCCAAATGAGAGTTGCCTGGAAAATGCAGAGAGTCGTATGTGGCCAGTGGGAAGCATCAACAGAAATCTTTCAAATAAAGAGATGATTGAA
Seq A exon
GTAG
Seq C2 exon
AAATGAAGGTTCAACTGGAACTTCCCCGAGGTACAAAACCCTATGAGTGTAAACCGTGTATGAAAATGGTCAGCCTGCCATCGCAGTGCAGCAAGCAGCATGCATACTATCCAAGTGTGAAACCATACGAATGGAAGGAATGTCAGAAAGCTTTCTGTTACAAGTCAGCGCTCACTCAACACCAGAGAGCTCGTACAAGATTGAAGATCTATCAGTGTACAGAATGCAAGAAAGCTTTCTCCTCCAAATCAGAACTCACTGTGCATCATAGAATTCATACTGGTGAGAAGCCCCATGCATGTGAAGAATGTGGGAAAGCTTTCTATCGTAAGTCAACCCTTACAGTACATCAGAAAACTCATAGAGGTGAGAAACCTTACGAATGTAAAGAATGTTGGAAAGCTTTCTATTATAAGTCAACCCTCACTGAACATCAGCGAATTCATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036898-14-11,15-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGTCGTATGTGGCCAGT
R:
AGGGTTTTGTACCTCGGGGAA
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types