MmuALTD0016044-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000067942 | Zfp160
Description
zinc finger protein 160 [Source:MGI Symbol;Acc:MGI:108187]
Coordinates
chr17:21008886-21011772:+
Coord C1 exon
chr17:21008886-21008986
Coord A exon
chr17:21008987-21009108
Coord C2 exon
chr17:21011676-21011772
Length
122 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGA
5' ss Score
2.43
3' ss Seq
TGTATGCTTTTGGTATTCAGGAT
3' ss Score
6.96
Exon sequences
Seq C1 exon
TGGTCCCGCCTTATTTTACCCCGGATCTGACCGCGAATGCTGAATGCACTCCTGCGCAGCGACCCGGAAGCGGTTTTGCTCTGCATAAATTTTGTAGCTGG
Seq A exon
GTGAGTTTTCCCAGATTCTTTAGGCCGGTTGCTGGCACTCAGAACCCGGACCTCTGCCCTGGAGTCCCCATCTTGTGTGCAAAGCTCCACTCGGTGACGCGGAGAGCTGCGAGACTGAGGAA
Seq C2 exon
GATTGACTTCTAAACATTAATGTTGCACAAGGAAGAACCTGGGAGAAGGAGAAGAAAGAGGAAATAAAAAAAAAAGCCAGGGATGGCTGTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067942-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.400
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGCCTTATTTTACCCCG
R:
CTGAGTGACAGCCATCCCTGG
Band lengths:
196-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types