MmuALTD0016050-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000051469 | Zfp191
Description
zinc finger protein 191 [Source:MGI Symbol;Acc:MGI:1929704]
Coordinates
chr18:24176169-24178821:-
Coord C1 exon
chr18:24178719-24178821
Coord A exon
chr18:24178333-24178718
Coord C2 exon
chr18:24176169-24176669
Length
386 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTCTGTTTCTTATACCTTAGGAG
3' ss Score
8.11
Exon sequences
Seq C1 exon
GCTGGGGCAGGCTGGGCACGGCGCTGTGAGGCGGGAGGTCGCTGAAGACCTGGATCCTGCCGAGTGCCGGATTGCACATTCCACGAGCTTGGTGCAGTACAAA
Seq A exon
GTAAAAGAAAAAGCAGTTTCTGTTATGTAGAAATACGTGAGCTGTTGATAAGAGTCGGCTCCAGGAATAAGAACAAATAACTTGGATTTTGTTCTCAGGCCATCCCACTCTTATCTATATGACCTGTCAGTTTGATACAGCATTTTCTCATCCTTTGTCTTCACCTTGACCGGTTTCAGTAAGGTTTTGTTAAGTTTCTGGTTTTTTGGTTCTTGGCTCTGATTGATTAAACAGTAGCTGTAGAGTTAAGAGTGTCTATGTGCTGTTATCCGTGGCACGGTTATGATTTTGCAAATACCAAAAGGACCAGAAAGTAGTTCAAATTTCCCCGAAGGAAAAGTTAGGGAAGCTGACTGAGGAAAAAAGACTCCTGTCCACTGAGAACT
Seq C2 exon
GAGTACTTTTGAGGAAAACAGGGTATTTCTCTGAGGTGTATACCTTGCCTCCATTGCCTTTTCTTGAAGTACTGTAACAGAATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGATGGTGAAGAGGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGGTTTTCCGGCAGCGCTTCAGGCAATTTGGATACCAGGATTCACCAGGACCTCGAGAGGCGGTGAGCCAGCTCCGAGAACTTTGCCGCCTGTGGCTCAGACCAGAGACACACACAAAGGAGCAGATACTGGAGCTGGTAGTTTTGGAGCAGTTTGTTGCCATCCTACCCAAGGAGCTACAGACTTGGGTTCGAGAGCATCACCCAGAGAATGGAGAGGAGGCAGTGGCTGTTCTAGAGGACTTGGAGAGTGAGCTTGATGACCCTGGTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051469-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGCACATTCCACGAGCT
R:
CAAAGTTCTCGGAGCTGGCTC
Band lengths:
346-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: