MmuALTD0016050-4/5 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000051469 | Zfp24
Description
zinc finger protein 24 [Source:MGI Symbol;Acc:MGI:1929704]
Coordinates
chr18:24017668-24020320:-
Coord C1 exon
chr18:24020218-24020320
Coord A exon
chr18:24019832-24020217
Coord C2 exon
chr18:24017668-24018168
Length
386 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTCTGTTTCTTATACCTTAGGAG
3' ss Score
8.11
Exon sequences
Seq C1 exon
GCTGGGGCAGGCTGGGCACGGCGCTGTGAGGCGGGAGGTCGCTGAAGACCTGGATCCTGCCGAGTGCCGGATTGCACATTCCACGAGCTTGGTGCAGTACAAA
Seq A exon
GTAAAAGAAAAAGCAGTTTCTGTTATGTAGAAATACGTGAGCTGTTGATAAGAGTCGGCTCCAGGAATAAGAACAAATAACTTGGATTTTGTTCTCAGGCCATCCCACTCTTATCTATATGACCTGTCAGTTTGATACAGCATTTTCTCATCCTTTGTCTTCACCTTGACCGGTTTCAGTAAGGTTTTGTTAAGTTTCTGGTTTTTTGGTTCTTGGCTCTGATTGATTAAACAGTAGCTGTAGAGTTAAGAGTGTCTATGTGCTGTTATCCGTGGCACGGTTATGATTTTGCAAATACCAAAAGGACCAGAAAGTAGTTCAAATTTCCCCGAAGGAAAAGTTAGGGAAGCTGACTGAGGAAAAAAGACTCCTGTCCACTGAGAACT
Seq C2 exon
GAGTACTTTTGAGGAAAACAGGGTATTTCTCTGAGGTGTATACCTTGCCTCCATTGCCTTTTCTTGAAGTACTGTAACAGAATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGATGGTGAAGAGGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGGTTTTCCGGCAGCGCTTCAGGCAATTTGGATACCAGGATTCACCAGGACCTCGAGAGGCGGTGAGCCAGCTCCGAGAACTTTGCCGCCTGTGGCTCAGACCAGAGACACACACAAAGGAGCAGATACTGGAGCTGGTAGTTTTGGAGCAGTTTGTTGCCATCCTACCCAAGGAGCTACAGACTTGGGTTCGAGAGCATCACCCAGAGAATGGAGAGGAGGCAGTGGCTGTTCTAGAGGACTTGGAGAGTGAGCTTGATGACCCTGGTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051469-1-3,2-3,3-3,4-3,5-3-4/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGCACATTCCACGAGCT
R:
CAAAGTTCTCGGAGCTGGCTC
Band lengths:
346-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types