MmuALTD0016067-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000042097 | Zfp239
Description
zinc finger protein 239 [Source:MGI Symbol;Acc:MGI:1306812]
Coordinates
chr6:117819236-117820796:+
Coord C1 exon
chr6:117819236-117819291
Coord A exon
NA
Coord C2 exon
chr6:117820274-117820796
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
3' ss Seq
TTAAATTCTCTGTTTCCTAGGAG
3' ss Score
8.57
Exon sequences
Seq C1 exon
AACTCTGAAGGCATGACGGTTTGAGCTCTCGTGCCCGCAGTCTGCTTCCACAGCCG
Seq A exon
NA
Seq C2 exon
GAGAGTCAAACACAAATTCTGTGGAGAATCTTCAAGAGAAAGACCTTCAAGAGTCTGGAGAGATGACTCAGAAACCAAGAGCACCCCTAGCTCCTGTAAGTTCAGTCCCCAGCACCCACATGGTGGCTCACCATCCATCACTCCAGTTCTAGGAGAGCCAAGGACCTCTTTCACCTCCATCAGGACCATACTGGCATGTGCTGCACAGGCATCCTTGCAGGCAAAACACTTAACACGTGAAATAAAAATCTTTAAAGTGAGAGAAAGAGAAAAGACTTCAGGATTTTTCCTAGTGGCTGATTTTGAAAGAAATGGCCAGTCAGTAGCTGGAAGTTGAGTTTATATTGTGAATCTTCAAGAGGTACACACCAATACTGAAGTAGATTGCTGTCAAAAGTGGGGAGAAGTGTCTTGCCATATTTCCCAAAACCACAGATTTCGGTGACTCTTTAAAGTTATTTCACCAACATTGAAAGTGGAAAAAAAATTTTTTATCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042097-8-8,9-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.420
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=13.4),PF079757=C1_4=WD(100=26.2),PF134651=zf-H2C2_2=WD(100=12.9),PF134651=zf-H2C2_2=WD(100=12.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCAGTCTGCTTCCACAG
R:
GGGTGCTCTTGGTTTCTGAGT
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: