MmuALTD0016113-1/8 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000024276 | Zfp397
Description
zinc finger protein 397 [Source:MGI Symbol;Acc:MGI:1916506]
Coordinates
chr18:23954761-23956853:+
Coord C1 exon
chr18:23954761-23954861
Coord A exon
NA
Coord C2 exon
chr18:23956339-23956853
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
3' ss Seq
AATGCTTTCATGTATTGTAGGAA
3' ss Score
9.66
Exon sequences
Seq C1 exon
CTGCGGCAGATCCCGAAGTCGCCGCTGTCAGCTGGAGAGCCCCGTGGAGCCCCCTCGGGCACGCGCCTACGCTGTGCTTTAACCCGGAAGCTAAAAATAGG
Seq A exon
NA
Seq C2 exon
GAAAGAAGAGGTTACACCTGGGCCCCGAGAGGCTCTGGAAACTCCTCCCCAAGCACAAAACCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTGTGGAATCCAGAGCAATTTCAACTTTAAAACCTCAGGACCATCAAGAAGAATTAATACTAGTGAAAATAGAAGATAGTAGCTTTTCTTGGAGTCAGAAATGTAAACAGAATGGGAGTGCCCAATCTTGCCAAGAATTATTTCGCCAGCAATTCAGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGGCGACTCCAGGAACTTTGCCATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCCTAGAACTGTTAGTGCTGGAGCAGTTCCTGAGCATCCTACCTGAAGAGCTGAAGATATGGGTTCAACAACATGGTCCAAAAAGTGGTGAGGAAGCTGTGACTCTACTGGAGGATTTGGAGAAAGAGTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024276-1-0,2-0,3-0,4-0,5-0,6-0,7-0,8-0-1/8
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=68.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAGCCCCGTGGAG
R:
GGAGGAGTTTCCAGAGCCTCT
Band lengths:
118-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types