MmuALTD0016113-6/6 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000024276 | Zfp397
Description
zinc finger protein 397 [Source:MGI Symbol;Acc:MGI:1916506]
Coordinates
chr18:24113262-24115354:+
Coord C1 exon
chr18:24113262-24113362
Coord A exon
chr18:24113363-24113684
Coord C2 exon
chr18:24114840-24115354
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
AATGCTTTCATGTATTGTAGGAA
3' ss Score
9.66
Exon sequences
Seq C1 exon
CTGCGGCAGATCCCGAAGTCGCCGCTGTCAGCTGGAGAGCCCCGTGGAGCCCCCTCGGGCACGCGCCTACGCTGTGCTTTAACCCGGAAGCTAAAAATAGG
Seq A exon
GTGCGTGCGGCGAGCCGCGAGGAAGGCAGGTGTGGAGCTGGTGTCTCGCTAGCGGGCGCACGGAGCTGTGGTGTCGCCGCTCGGGGTCCTTCCCCATGGGACTGAGGGAGAGGGAGAGAGCGGACCCGGCGACTGAGAAGCGCAGAGGTGGTCAGCGTCTGGGTGAGAGCCGCGGGAACGCCGCCTGGGCCGCCCCAGGCAGTACGGGGGCCAGGAGGTCCGGCGTGGCGAGGACGCAGGCTTAGTTAATGTGACCTAGATGGTTGTAGGGGAAGCAAGGCGTCCGGACTTGAGGCTGCTTGACAGGGCTCAGGTTTCTCAG
Seq C2 exon
GAAAGAAGAGGTTACACCTGGGCCCCGAGAGGCTCTGGAAACTCCTCCCCAAGCACAAAACCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTGTGGAATCCAGAGCAATTTCAACTTTAAAACCTCAGGACCATCAAGAAGAATTAATACTAGTGAAAATAGAAGATAGTAGCTTTTCTTGGAGTCAGAAATGTAAACAGAATGGGAGTGCCCAATCTTGCCAAGAATTATTTCGCCAGCAATTCAGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGGCGACTCCAGGAACTTTGCCATCAGTGGCTAATGCCAGAGTTGCACACAAAGGAGCAGATCCTAGAACTGTTAGTGCTGGAGCAGTTCCTGAGCATCCTACCTGAAGAGCTGAAGATATGGGTTCAACAACATGGTCCAAAAAGTGGTGAGGAAGCTGTGACTCTACTGGAGGATTTGGAGAAAGAGTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024276-0-0,1-0,2-0,3-0,4-0,5-0-6/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=68.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTTTAACCCGGAAGCT
R:
CAAAGTTCCTGGAGTCGCCC
Band lengths:
355-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: