MmuALTD0016117-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000048410 | Zfp407
Description
zinc finger protein 407 [Source:MGI Symbol;Acc:MGI:2685179]
Coordinates
chr18:84315806-84343066:-
Coord C1 exon
chr18:84342967-84343066
Coord A exon
chr18:84342946-84342966
Coord C2 exon
chr18:84315806-84315984
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTCCTTTCTTGCTTGATAGGTC
3' ss Score
12.32
Exon sequences
Seq C1 exon
GGGAAAAGCCTTTCAAATGTGATGAGTGTAACTTCGCCTCCACAACCCAGTCACACTTGACTCGTCATAAGCGTGTGCACACTGGAGAGAAGCCATACAG
Seq A exon
GTGCCCTTGGTGTGACTACAG
Seq C2 exon
GTCAAATTGTGCTGAGAATATCCGCAAACACATTTTACACACCGGCAAACATGAAGGTGTCAAGATGTACAACTGCCCAAAATGCGACTATGGGACGAATGTCCCCGTGGAGTTCCGAAACCACCTGAAAGAGCAGCACCCCGACATTGAGAACCCTGACCTCGCGTACTTGCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048410-22-17,23-17,24-17-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=36.6),PF134651=zf-H2C2_2=PU(84.6=53.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(11.5=4.9),PF139091=zf-H2C2_5=WD(100=41.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGTCATAAGCGTGTGCA
R:
TGACACCTTCATGTTTGCCGG
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types