MmuALTD0016120-3/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000047003 | Zfp41
Description
zinc finger protein 41 [Source:MGI Symbol;Acc:MGI:99186]
Coordinates
chr15:75616720-75619691:+
Coord C1 exon
chr15:75616720-75616820
Coord A exon
chr15:75616821-75617028
Coord C2 exon
chr15:75618044-75619691
Length
208 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
3' ss Seq
GTTCATGCTTTTGCCTCCAGAAG
3' ss Score
7.06
Exon sequences
Seq C1 exon
GGGAGTGGCGGGCTCAAGTGGGCATTGTTAACGGTCGCCCGCCCGCCGGTCAGCCTGCTTACGGCCACGTTCCGCCGGCGTCTGTGCTCGGCACCCATCAG
Seq A exon
GTACTCTCTGCGTGTGTGCACGGTAGCCCCGACCGGGCGAAGGCCGGCTTCTGAGTCGTTTCTCTGTGGACCACCTCGGCGGTGTTGCAGAGGTCCTTGGAGGCGGGGAAGGTGGGCCGGGCTACCTAGCGAAGCCCCTTGTTGCTGGATGCATTGAGCGCCTTATCCTGCCGGCTCCAGCAGCTCCTTGATGGACCTGAGTCCCTAG
Seq C2 exon
AAGCAAGACGACCGTGGTTCTGTCTGCTTGATGCAGCTTCGTACGCAGGAGCTGTCCCTGACAGCGAAGTCCCAGAGAAGGAGCCAGGCAGCCACTGTCTGAAAACCCTCAGCCTTCCCTGGCCTCCAGGGGGGTTTCCTGCTTCCTAAGAGCAGCAATGGAAAAGCCTGCAACTAGGAAAAAGAAGAGTCAGGCCCCAAAGGAGGAGGCAGGTGCGCAAAAGGCCACTGTCAAGGGAGAGAAAACATCAAAGGGGAAAAAGGCAACCAAGAAGCCAAGAAAGCCCCGCAGACCCCGAAAAGAACCTGTCCTGAGCCCCGAGGACGAAGCACATATCTTTGATGCCTTCGATGCCTCGTTTAAAGATGACTTTGAGGGTGTCCCCGTGTTTGTCCCTTTTCAGAGGAAGAAGCCCTATGAGTGTGGTGAATGTGGACGGATCTTTAAACACAAGACAGATCACATTCGCCACCAGAGAGTTCACACTGGAGAGAAGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047003-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=12.1),PF134651=zf-H2C2_2=WD(100=13.1),PF134651=zf-H2C2_2=WD(100=13.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCAAGTGGGCATTGTTA
R:
TCCTTTGGGGCCTGACTCTTC
Band lengths:
296-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types