MmuALTD0016137-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50699871-50700995:-
Coord C1 exon
chr11:50700895-50700995
Coord A exon
chr11:50700868-50700894
Coord C2 exon
chr11:50699871-50700000
Length
27 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
ACCCGGCCCTCTCATTACAGGAG
3' ss Score
9.96
Exon sequences
Seq C1 exon
CCAGCTCATTGTGTCCTGACTACTCTGTCGAGGCTATGCTCTGCAGTGGACAAGCTTCTAAGGGAAGCCCCACGGTGATCTGCAGTGTCCAGAGACTGAAG
Seq A exon
GTCAGGTCTGGGAGTTGAGAACAGAGG
Seq C2 exon
GAGTGCAGATGCTTCTAGCCAGAGAACCCCAGCAATTGTAAAGCTCCTCCCCTGCCTCCTTCCTACTCAATGCTCCTCAGCTCACCAGAGAAAAGGAATGGCTGTCAGCCAGCTCCCGGCCCTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.462
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACTACTCTGTCGAGGCT
R:
ATTGCTGGGGTTCTCTGGCTA
Band lengths:
123-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: