MmuALTD0016143-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000070420 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:MGI Symbol;Acc:MGI:3647079]
Coordinates
chr5:145283379-145286462:+
Coord C1 exon
chr5:145283379-145283780
Coord A exon
NA
Coord C2 exon
chr5:145286308-145286462
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
GGTATGGGGATTCTCCTTAGGTT
3' ss Score
4.26
Exon sequences
Seq C1 exon
CCTTGCCGGAGCTTGAAGATGCTGAAAGAGCGTCTGGAGATGGCAGGAGATCCTCAGCAGCAGATGGGTGCTCCAGTGGTCAAACTGGAGAAGGAGCTGCCATGGGGCAGGGGAGGGGAGGACTCGAGTCCCGAGGCATTTCGGTTGAGGTTTCGGCAGTTCCGCTACCAAGAGGCTGCTGGTCCCCAGGAAGCCCTCAGGGAGCTCCAAGAGCTCTGTCGCCGGTGGCTGAGGCCGGAGCTGCACACCAAAGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCCCGAGAGTTCTACACCTGGATCCGGGAACACAGCCCAGACAGCGGCAAGGCTCTGGTGGCCATGGTGGAGGAGCTGATGGGGAGCACGGAGGCCAAGGCG
Seq A exon
NA
Seq C2 exon
GTTCCATGCCATGCCCAGGGAGAGCAGCTGGTCACAGCCCTTGGCGGAGCATCGTGGCAATCAGGCATCCACCTGGGGCCGGTAGAAGTCAAACCTGAGTGGGGGATACCCCAGGGGGAAGGAGTTCAGAGCCTAGGCCCAAGCACCACAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070420-1-2,2-2,3-2,4-2-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=NA C2=0.372
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=71.9)
A:
NA
C2:
PF0202312=SCAN=PD(1.1=1.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGCTGATGGGGAG
R:
GGATGCCTGATTGCCACGATG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types