MmuALTD0016165-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000045519 | Zfp560
Description
zinc finger protein 560 [Source:MGI Symbol;Acc:MGI:1915280]
Coordinates
chr9:20351838-20352828:-
Coord C1 exon
chr9:20352753-20352828
Coord A exon
NA
Coord C2 exon
chr9:20351838-20351964
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
ACAAGCGTGTGTGATTGTAGGAG
3' ss Score
3.8
Exon sequences
Seq C1 exon
GAACCCAAGCTACTTTCATAATGAAAAAACAGAGATGGAAAAGACGGTGTCTGACTGCTGGACAAGTAGTTACCAG
Seq A exon
NA
Seq C2 exon
GAGTCAGTGACCTTTGAGGATGTGGCTGTAGACTTCACCCAGGAGGAATGGATTTTATTGGACACAAAACAACGGAACCTTTACAGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCTACATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045519-8-8,9-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGACGGTGTCTGACTG
R:
TCCATTCCTCCTGGGTGAAGT
Band lengths:
93-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types